徐冬溶 博士

 

 

 

 

 

 

 

徐冬溶博士:毕业于南京大学和浙江大学计算机系,获博士学位。曾分别在北京大学计算机科学与技术研究所、北大方正技术研究院、中国科学院、纽约州立大学石溪分校计算机系和心理学系、约翰霍普金斯大学医学院放射学系、宾夕法尼亚大学医学院和美国Amiable软件公司工作。现任哥伦比亚大学医学院副教授和纽约州立精神疾病研究所高级研究科学家,华东师范大学心理学院认知神经研究所紫江讲座教授。主要研究方向为生物医学磁共振图象处理和分析,计算机科学虚拟现实技术在脑功能研究中应用和可视化。

 

Dongrong Xu, Ph.D. Adjunct Zijiang Lecture Professor
Director, Laboratory of Biomedical Imaging and Computational Bioinformatics
Dr. Dongrong Xu graduated from Nanjing University and Zhejiang University, where he obtained his Ph.D. degree in Computer Science and Engineering. He had worked in Peking University Institute of Computer Science and Technology, the Research Institute of Peking University Founder Group Corporation, New York State University at Stony Brook Departments of Computer Science and Psychology, Johns Hopkins University School of Medicine, University of Pennsylvania School of Medicine, and a US software company (Amiable Incorporation). Dr. Xu is now an Associate Professor at Columbia University College of Physicians and Surgeons, a senior Research Scientist at the New York State Psychiatric Institute, and an adjunct faculty in the Institute of Cognitive Neuroscience at East China Normal University School of Psychology and Cognitive. Dr. Xu’s research interests include biomedical image analysis, magnetic resonance imaging, the applications of computer virtual reality in brain functional research, and scientific visualization.


Selected Journal Publications:
1. Shaohua Hu, Mingrong Yao, Bradley S. Peterson, Dongrong Xu, Jianbo Hu, Jianliang Tang, Bing Fan, Zhengluan Liao, Tianyi Yuan, Yaling Li, Weiqing Yue, Ning Wei, Weihua Zhou, Manli Huang, Yi Xu, "A Randomized, 12-Week Study of the Effects of Extendedrelease Paliperidone (Paliperidone ER) and Olanzapine on Metabolic Profile, Weight, Insulin Resistance, and β-Cell Function in Schizophrenic Patients", Psychopharmacology, 230:3-13, 2013; DOI: 10.1007/s00213-013-3073-1 (PDF)
2. Qingli Li, Xiaofu He, Yiting Wang, Hongying Liu, Dongrong Xu, Fanmin Guo, "Review of Spectral Imaging Technology in Biomedical Engineering: Achievements and Challenges", Journal of Biomedical Optics, 18(10):100901, Oct 10 2013; DOI: 10.1117/1.JBO.18.10.100901 (PDF)
3. * Xiaozheng Liu, Zhenming Yuan, Junming Zhu, Dongrong Xu, "Medical image registration by combining global and local information: A chain-type diffeomorphic demons algorithm", Physics in Medicine and Biology , 58: 1-20, 2013. DOI: 10.1088/0031-9155/58/23/8359 (PDF)
4. Yuzhen Zhang, Xu Yan, Yu Gao, Dongrong Xu, Jie Wu, Yuhua Li, "A Preliminary Study of Epilepsy in Children Using Diffusional Kurtosis Imaging", Clinical Neuroradiology, 2013, DOI 10.1007/s00062-013-0212-3 (Published online on May 29, 2013) (PDF)
5. * Dazhi Yin, Fan Song, Dongrong Xu, Limin Sun, Weiwei Men, Lili Zang, Xu Yan, Mingxia Fan, "Altered Topological Properties of the Cortical Motor-Related Network in Patients with Subcortical Stroke Revealed by Graph Theoretical Analysis", Human Brain mapping, 2013 (in press) (online version: PDF)
6. Ravi Bansal, Xuejun Hao, Feng Liu, Dongrong Xu, Jun Liu, Bradley S. Peterson, "The Effects of Changing Water Content, Relaxation Times, and Tissue Contrast on Tissue Segmentation and measures of Cortical Anatomy in MR Images", Magnetic Resonance Imaging, 2013 DOI:10.1016/j.mri.2013.07.017 (in press, online version: PDF)
7. Gregory Z. Tau, Rachel Marsh, Zhishun Wang, Tania Torres-Sanchez, Barbara Graniello, Xuejun Hao, Dongrong Xu, Mark G. Packard, Yunsuo Duan, Alayar Kangarlu, Diana Martinez, and Bradley S. Peterson, "Neural Correlates of Reward-Based Spatial Learning in Persons with Cocaine Dependence", Neuropsychopharmacology, 2013, (in press) DOI: 10.1038/npp.2013.189 (online version: PDF)
8. * Xiaozheng Liu, Wei Liu, Weidong Chen, Junming Zhu, Yongdi Zhou, Bradley S. Peterson, Dongrong Xu, "A Locally Linear Least Squares Method for Simultaneously Smoothing DWI Data and Estimating Diffusion Tensors", Journal of Medical and Biological Engineering, 33(3):275-284, 2013, doi:10.5405/jmbe.1174 (PDF)
9. Qingli Li, Dongrong Xu, Xiaofu He, Wang Yiting, Zenggan Chen, Hongying Liu, Qintong Xu, Fangmin Guo, "AOTF Based Molecular Hyperspectral Imaging System and Its Applications on Nerve Morphometry", Applied Optics, 52(17): 3891-3901, 2013 (DOI: 10.1364/AO.52.003891) (PDF)
10. * Xu Yan, Mingxiong Zhou, Lingfang Ying, Dazhi Yin, Mingxia Fan, Guang Yang, Yongdi Zhou, Fan Song, Dongrong Xu, "Evaluation of Optimized b-Value Sampling Schemas for Diffusion Kurtosis Imaging with an Application to Stroke Patient Data", Computerized Medical Imaging and Graphics, 37(4): 272-280, 2013, DOI: 10.1016/j.compmedimag.2013.04.007 (published on line June 2, 2013)(PDF)
11. Dazhi Yin, Yanli Luo, Fan Song, Dongrong Xu, Bradley S. Peterson, Limin Sun, Weiwei Men, Xu Yan, Mingxia Fan, "Functional reorganization associated with outcome in hand function after stroke revealed by regional homogeneity", Neuroradiology, 55(6):761-770, 2013 (published on line on Feb 16, 2013), DOI 10.1007/s00234-013-1146-9 (PDF)
12. Shaohua Hu, Dongrong Xu, Bradley S Peterson, Mingmin Zhang, QD Wang, Xiaofu He, JB Hu, XJ Xu, N Wei, D Long, ML Huang, WH Zhou, WJ Xu, Yi Xu, "Association of Cerebral Networks in Resting State with Sexual Preference of Homosexual Men: A Study of Regional Homogeneity and Functional Connectivity", PLoS ONE, 8(3): e59426. doi:10.1371/journal.pone.0059426, 2013 (accepted, in press) (PDF)
13. Hui Dai, Dazhi Yin, Chunhong Hu, John N Morelli, Su Hu, Xu Yan, Dongrong Xu, "Whole-Brain Voxel-Based Analysis of Diffusion-Tensor MRI Parameters in Patients with Primary Open Angle Glaucoma and Correlation with Clinical Glaucoma Stage", Neuroradiology, 55:233–243, 2013; doi: 10.1007/s00234-012-1122-9 (published online Dec 9, 2012) (PDF)
14. Wei Liu, Zhenyu Zhou, Xiaozheng Liu, Xu Yan, Guang Yang, Zhunliang Wang, Yongdi Zhou, Bradley S Peterson, Dongrong Xu, "A Slice-Based Optimization Algorithm for Diffusion Tensors", (中文Chinese) Journal of Southern East University (Edition of Natural Science), 43(1):30-34, 2013, doi: 10.3969/j.issn.1001-0505.2013.01.006 (PDF)
15. Xuejun Hao, Dongrong Xu, Ravi Bansal, Zhengchao Dong, Jun Liu, Zhishun Wang, Alayar Kangarlu, Feng Liu, Yunsuo Duan, Satie Shova1, Bradley S. Peterson, "Multimodal Magnetic Resonance Imaging: The Coordinated Use of Multiple, Mutually Informative Probes to Understand Brain Structure and Function", Human Brain Mapping, 34(2):253-271, 2013, DOI: 10.1002/hbm.21440 (published online on Nov 11, 2011) (PDF)
16. Dazhi Yin, Fan Song , Dongrong Xu, Bradley S. Peterson, Limin Sun, Weiwei Men, Xu Yan, Mingxia Fan, "Patterns in Cortical Connectivity for Determining Outcomes in Hand Function after Subcortical Stroke", PLoS ONE, 7(12): e52727, Dec 2012, doi: 10.1371 / journal.pone.0052727 (published on line Dec 20, 2012) (PDF)
17. Ravi Bansal, Lawrence H. Staib, Andrew F. Laine, Xuejun Hao, Dongrong Xu, Jun Liu, Myrna Weissman, Bradley S. Peterson, "Anatomical Brain Images Alone Can Accurately Diagnose Chronic Neuropsychiatric Illnesses", PLoS ONE, 7(12): e50698. doi:10.1371/journal.pone.0050698 , Dec 2012 (published on line on Dec 7, 2012) (PDF)
18. Hongzhi Liu, Zhonghai Wu, D. Frank Hsu, Bradley S. Peterson, Dongrong Xu, "On the Generation and Pruning of Skeletons Using Generalized Voronoi Diagrams", Pattern Recognition Letters, 33:2113-2119, 2012 (PDF)
19. Xiaozheng Liu, Wei Liu, Weidong Chen, Yongdi Zhou, Bradley S. Peterson, Dongrong Xu, "A Locally Linear Least Squares Method for Simultaneously Smoothing DWI Data and Estimating Diffusion Tensors", Journal of Medical and Biological Engineering, 2012 (accepted, in press) (PDF)
20. Marc Dubin, Myrna Weissman, Dongrong Xu, Ravi Bansal, Xuejun Hao, Jun Liu, Virginia Warner, Bradley Peterson, "Identification of a circuit-based endophenotype for familial depression", Psychiatry Research: Neuroimaging, 201: 175-181, 2012 (PDF)
21. Wei Liu, Xiaozheng Liu, Guang Yang, Zhenyu Zhou, Yongdi Zhou, Gengying Li, Marc Dubin, Ravi Bansal, Bradley S Peterson, Dongrong Xu, "Improving the Correction of Eddy Current Induced Distortion in Diffusion-Weighted Imaging Data by Recognizing and Excluding Ventricles", Computerized Medical Imaging and Graphics, 36:542-551. 2012 (PDF)
22. Dongrong Xu, Xuejun Hao, Zhishun Wang, Yunsuo Duan, Feng Liu, Rachel Marsh, Shan Yu, Bradley S. Peterson, "A Virtual Radial Arm Maze for the Study of Multiple Memory Systems in a Functional Magnetic Resonance Imaging Environment", Internal Journal of Virtual Reality, 11(2)61-74,2012 (PDF)
23. Qing Fan, Xu Yan, Jijun Wang, Ying Chen, Xuemei Wang, Chunbo Li, Ling Tan, Chao You, Tianhong Zhang, Sai Zuo, Dongrong Xu, Kemin Chen, Jodie Marie Finlayson-Burden, Zeping Xiao, "Abnormalities of White Matter Microstructure in Unmedicated Obsessive-Compulsive Disorder and Changes after Medication", PLoS ONE, Vol. 7, Issue 4, Page e35889, April 2012 (published on line on April 27, 2012) (PDF)
24. 24. Hui Dai, John N Morelli, Fei Ai, Dazhi Yin, Chunhong Hu, Dongrong Xu, Yonggang Li, "Resting-State Functional MRI: Functional Connectivity Analysis of the Visual Cortex in Primary Open-Angle Glaucoma Patients", Human Brain Mapping, 2012 (published on line on Mar 28, 2012) DOI: 10.1002/hbm.22079 (PDF)
25. Zhenyu Zhou, Xunheng Wang, Nelson J. Klahr, Wei Liu, Diana Arias, Hongzhi Liu, Karen M von Deneen, Ying Wen, Zhuhong Lu, Dongrong Xu, Yijun Liu, "A Conditional Granger Causality Model Approach for Group Analysis in Functional Magnetic Resonance Imaging", Magnetic Resonance Imaging, 29:418-433, 2011 (PDF)
26. Xuejun Hao, Dongrong Xu, Ravi Bansal, Jun Liu, Bradley S. Peterson, "An Improved Representation of Regional Boundaries on Parcellated Morphological Surfaces", Computerized Medical Imaging and Graphics, 35:206-219, 2011 (PDF)
27. 27. Zhenyu Zhou, Wei Liu, Jiali Cui, Xunheng Wang, Diana Arias, Ying Wen, Ravi Bansal, Xuejun Hao, Zhishun Wang, Bradley S. Peterson, Dongrong Xu, "Automated Artifact Detection and Removal for Improved Tensor Estimation in Motion-Corrupted DTI Datasets Using the Combination of Local Binary Patterns and 2D Partial Least Squares", Magnetic Resonance Imaging, 29(2):2030-242, 2011 (PDF)
28. Suzanne Goh, Ravi Bansal, Dongrong Xu, Xuejun Hao, Jun Liu, Molly Algermissen, Bradley S. Peterson, “Neuroanatomical Correlates of Intellectual Ability Across the Life Span”, Developmental Cognitive Neuroscience, 1:305-312, 2011 (PDF)
29. Ann Miller, Ravi Bansal, Xuejun Hao, Juan Pablo Sanchez-Pena, Loren J Miller, Jun Liu, Dongrong Xu, Hongtu Zhu, M. Mallar Chakravarty, Kathleen Durkin, Iliyan Ivanov, Kerstin J. Plessen, Christoph B Kellendonk, Bradley S. Peterson, "Enlargement of Thalamic motor Nuclei in Persons with Tourette Syndrome", Archives of General Psychiatry, 67(9):955-964, Sept 2010 (PDF)
30. Rachel Marsh,Xuejun Hao, Dongrong Xu, Zhishun Wang, Yunsuo Duan, Jun Liu, Alayar Kangarlu, Diana Martinez, Felix Garcia, Gregory Tau, Shan Yu, Mark G Packard, Bradley S Peterson, "A Virtual Reality-Based FMRI Study of Reward-Based Spatial Learning", Neuropsychologia,48: 2912-2921, 2010 (PDF)
31. Feng Liu, Marianne Garland, Yunsuo Duan, Raymond I. Stark, Dongrong Xu, Ravi Bansal, Zhengchao Dong, Bradley S. Peterson, Alayar Kangarlu, "Techniques for In Utero, Longitudinal MRI of Fetal Brain Development in Baboons at 3T", Methods, 50 (2010): 147-156, 2010 (PDF)
32. Chen Weidong, Zhang Jianhui, Zhang Jicai, Li Yi, Qi Yu, Su Yu, Wu Bian, Zhang Shaomin, Dai Jianhua, Zheng Xiaoxiang, Xu Dongrong, "A P300 Based Online Brain-Computer Interface (BCI) System for Virtual Hand Control", International Journal of Zhejiang University (Science-C Computer & Electronics), 11(8):587-597, Aug 2010 (PDF)
33. Russell Tobe, Ravi Bansal, Dongrong Xu, Xuejun Hao, Jun Liu, Juan Sanchez-Pena, and Bradley Peterson, "Cerebellar Morphology in Tourette Syndrome and Comorbid Obsessive-Compulsive Disorder ", Annals of Neurology, 67(4): 479-487, 2010 (PDF)
34. Weidong Chen, Xiang Li, Y Hao, J Liu, Dongrong Xu, Xiaoxiang Zheng, "Play Games with Eyes: A Portable EOG Based HCI System for Game Control", Journal of Information and Computational Science, 6(5):2007-2014, October 2009 (Abstract)
35. Ravi Bansal, Lawrence H. Staib, Dongrong Xu, Andrew F. Laine, Jun Liu, Bradley S. Peterson, "Using Perturbation Theory to Reduce Noise in Diffusion Tensor Image Fields”, Medical Image Analysis, 13(4):580-597,2009 (PDF)
36. Dongrong Xu, Jiali Cui, Ravi Bansal, Xuejun Hao, Jun Liu, Bradley S. Peterson, “Ellipsoidal Area Ratio (EAR): An Improved Diffusion Anisotropy Index”, Magnetic Resonance Imaging. 27,311-323, 2009 (PDF)
37. Ravi Bansal, Lawrence H. Staib, Andrew F. Laine, Dongrong Xu, Jun Liu, Lainie F. Posecion b, Bradley S. Peterson, "Calculation of the confidence intervals for transformation parameters in the registration of medical images”, Medical Image Analysis, 13(2):215-233,2009 (PDF)
38. Elizabeth R Sowell, Eric Kan, June Yoshii, Paul M Thompson, Ravi Bansal, Dongrong Xu, Arthur W Toga, Bradley S Peterson, "Thinning of Sensorimotor Cortices in Children with Tourette Syndrome", Nature Neuroscience, 11, 637-639, 2008 (PDF)
39. Ravi Bansal, L H Staib, Dongrong Xu, A F Laine, J royal, Bradley S Peterson, "Using Perturbation Theory to Compute the Morphological Similarity of Diffusion Tensors", IEEE Transactions on Medical Imaging, May 2008, Vol. 27, No.5, pp.577-588 (PDF)
40. Dongrong Xu, Xuejun Hao, Ravi Bansal, Kerstin J Plessen, Bradley S Peterson, "Seamless Warping of Diffusion Tensor Images", IEEE Transactions on Medical Imaging, March 2008, Vol. 27, Number 3, pp.285-299 (PDF) (IEEE TMI version)
41. F Liu, M Garland, Y Duan, RI Stark, Dongrong Xu, Z Dong, R Bansal, BS Peterson, A Kangarlu, “Study of the Development of Fetal Baboon Brain Using Magnetic Resonance Imaging at 3 Tesla", Neuroimage, 40:148-159, 2008 (PDF)
42. BS Peterson, H Choi, X Hao, J Amat, H Zhu, R Whiteman, J Liu, Dongrong Xu, R Bansal , “Morphology of the amygdala and hippocampus in children and adults with Tourette syndrome", Arch Gen Psychiatry, 64(11)1281-1291, 2007. (PDF).
43. Dongrong Xu, Xuejun Hao, Ravi Bansal, Kerstin J Plessen, Weidong Geng, Kenneth Hugdahl, Bradley S Peterson. “Unifying the Analyses of Anatomical and Diffusion Tensor Images Using Volume-Preserved Warping”, Journal of Magnetic Resonance Imaging, 25(3):612-624, 2007 (PDF)
44. R Bansal, LH Staib, KJ Plessen, Dongrong Xu, BS Peterson, “Voxel-Wise Comparisons of the Morphology of Diffusion Tensors across Groups of Experimental Subjects", Psychiatry Research: Neuroimaging, 156:225-245, 2007, (PDF)
45. H Zhu, Dongrong XU, A Raz, X Hao, H Zhang, A Kangarlu, R Bansal, BS. Peterson, “A Statistical Framework for the Classification of Tensor Morphologies in Diffusion Tensor Images”, Magnetic Resonance Imaging, 24(5):569-82, 2006 (PDF)
46. R Bansal, LH Staib, Dongrong XU, H Zhu, and BS Peterson, “Statistical Analyses of Brain Surfaces Using Gaussian Random Fields on 2D Manifolds”, IEEE Transactions on Medical Imaging, 26(1):46-57, 2007 (PDF)
47. J Zhuang, J Hrabe, A Kangarlu, Dongrong XU, Ravi Bansal, Craig A. Branch, Bradley S. Peterson, “Correcting Eddy Current Distortions in Diffusion Tensor Images Using the Known Direction and Strength of Diffusion Gradients”, Journal of Magnetic Resonance Imaging, 24:1188-1193 (2006) (PDF)
48. K J Plessen, R Gruner, A Lundervold, JG Hirsch, Dongrong XU, R Bansal, BS Peterson, et al. "Reduced White Matter Connectivity in the Corpus Callosum of Children with Tourette Syndrome", Journal of Child Psychology and Psychiatry, 2006, 47(12):1013-1022 (PDF)
49. E Sowell, BS Peterson, E Kan, J Yoshii, R Bansal, Dongrong XU, H Zhu, P Thompson, AW Toga, “Sex Differences in Cortical Thickness Mapped in 176 Healthy Individuals Between 7 and 87 Years of Age”, Cerebral Cortex, (online Aug 31 2006), 2007 17(7):1550-1560 (PDF)
50. Dongrong XU, Susumu Mori, Dinggang Shen, Peter C. M. van Zijl, Christos Davatzikos, "Spatial Normalization of Diffusion Tensor Fields", Magnetic Resonance in Medicine, 50:175-182, 2003 (PDF)
51. Dongrong XU, Susumu Mori, Meiyappan Solaiyappan, Peter C. M. van Zijl, Christos Davatzikos, "A Framework for Callosal Fiber Distribution Analysis" , NeuroImage, November 2002, Vol. 17. pp.1131-1143 (PDF) (used as this issue's cover story)
52. Christos Davatzikos, Ahmet Genc, Dongrong Xu, Susan M. Resnick, "Voxel-based Morphometry Using the RAVENS Maps: Methods and Validation Using Simulation of Longitudinal Atrophy" , Neuroimage, Vol.14, December 1, 2001, pp.1361-1369 (PDF) (used as this issue's cover story)
53. XU Dongrong, PAN Yunhe, "Generation-oriented Analogy Reasoning", Science in China, Serial A, 1995, 38(9):150-167.